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MolecularSequenceList

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MolecularSequenceList(
  _id: String
  _lastUpdated: String
  _tag: String
  _profile: String
  _security: String
  _source: String
  _text: String
  _content: String
  _list: String
  _has: String
  _query: String
  _filter: String
  _type: String
  _sort: String
  _count: String
  _include: String
  _revinclude: String
  _summary: String
  _total: String
  _elements: String
  _contained: String
  _containedType: String
  _customSearchParameters: String
  chromosome: String
  identifier: String
  patient: String
  referenceseqid: String
  type: String
  variantEnd: String
  variantStart: String
  windowEnd: String
  windowStart: String
  chromosomeVariantCoordinate: String
  chromosomeWindowCoordinate: String
  referenceseqidVariantCoordinate: String
  referenceseqidWindowCoordinate: String
): [MolecularSequence!]

Arguments​

MolecularSequenceList._id ● String scalar​

Is used to allow searching based on the logical identifier of resources

MolecularSequenceList._lastUpdated ● String scalar​

Is used to match resources based on when the most recent change has been made

MolecularSequenceList._tag ● String scalar​

Is used to match resources based on tag information in the Resource.meta.tag element

MolecularSequenceList._profile ● String scalar​

Is used to match resources based on values in the Resource.meta.profile element

MolecularSequenceList._security ● String scalar​

Is used to match resources based on security labels in the Resource.meta.security element

MolecularSequenceList._source ● String scalar​

Is used to match resources based on source information in the Resource.meta.source element

MolecularSequenceList._text ● String scalar​

Is used to perform searches against the narrative content of a resource

MolecularSequenceList._content ● String scalar​

Is used to allow searching all textual content of a resource

MolecularSequenceList._list ● String scalar​

Is used to test resources against references in a List resource

MolecularSequenceList._has ● String scalar​

Provides limited support for reverse chaining - that is, selecting resources based on the properties of resources that refer to them

MolecularSequenceList._query ● String scalar​

Is used to execute a pre-defined and named query operation

MolecularSequenceList._filter ● String scalar​

Provides a syntax for expressing a set of query expressions on the underlying resources.

MolecularSequenceList._type ● String scalar​

Is used to allow filtering of types in searches that are performed across multiple resource types (e.g., searches across the server root)

MolecularSequenceList._sort ● String scalar​

Order to sort results in (can repeat for inner sort orders)

MolecularSequenceList._count ● String scalar​

Number of results per page

MolecularSequenceList._include ● String scalar​

Other resources to include in the search results that search matches point to

MolecularSequenceList._revinclude ● String scalar​

Other resources to include in the search results when they refer to search matches

MolecularSequenceList._summary ● String scalar​

Just return the summary elements (for resources where this is defined)

MolecularSequenceList._total ● String scalar​

Request a precision of the total number of results for a request

MolecularSequenceList._elements ● String scalar​

Request that only a specific set of elements be returned for resources

MolecularSequenceList._contained ● String scalar​

Whether to return resources contained in other resources in the search matches

MolecularSequenceList._containedType ● String scalar​

If returning contained resources, whether to return the contained or container resources

MolecularSequenceList._customSearchParameters ● String scalar​

One or more custom search parameters defined via SearchParameter

MolecularSequenceList.chromosome ● String scalar​

Chromosome number of the reference sequence

MolecularSequenceList.identifier ● String scalar​

The unique identity for a particular sequence

MolecularSequenceList.patient ● String scalar​

The subject that the observation is about

MolecularSequenceList.referenceseqid ● String scalar​

Reference Sequence of the sequence

MolecularSequenceList.type ● String scalar​

Amino Acid Sequence/ DNA Sequence / RNA Sequence

MolecularSequenceList.variantEnd ● String scalar​

End position (0-based exclusive, which menas the acid at this position will not be included, 1-based inclusive, which means the acid at this position will be included) of the variant.

MolecularSequenceList.variantStart ● String scalar​

Start position (0-based inclusive, 1-based inclusive, that means the nucleic acid or amino acid at this position will be included) of the variant.

MolecularSequenceList.windowEnd ● String scalar​

End position (0-based exclusive, which menas the acid at this position will not be included, 1-based inclusive, which means the acid at this position will be included) of the reference sequence.

MolecularSequenceList.windowStart ● String scalar​

Start position (0-based inclusive, 1-based inclusive, that means the nucleic acid or amino acid at this position will be included) of the reference sequence.

MolecularSequenceList.chromosomeVariantCoordinate ● String scalar​

Search parameter by chromosome and variant coordinate. This will refer to part of a locus or part of a gene where search region will be represented in 1-based system. Since the coordinateSystem can either be 0-based or 1-based, this search query will include the result of both coordinateSystem that contains the equivalent segment of the gene or whole genome sequence. For example, a search for sequence can be represented as chromosome-variant-coordinate=1$lt345$gt123, this means it will search for the MolecularSequence resource with variants on chromosome 1 and with position >123 and <345, where in 1-based system resource, all strings within region 1:124-344 will be revealed, while in 0-based system resource, all strings within region 1:123-344 will be revealed. You may want to check detail about 0-based v.s. 1-based above.

MolecularSequenceList.chromosomeWindowCoordinate ● String scalar​

Search parameter by chromosome and window. This will refer to part of a locus or part of a gene where search region will be represented in 1-based system. Since the coordinateSystem can either be 0-based or 1-based, this search query will include the result of both coordinateSystem that contains the equivalent segment of the gene or whole genome sequence. For example, a search for sequence can be represented as chromosome-window-coordinate=1$lt345$gt123, this means it will search for the MolecularSequence resource with a window on chromosome 1 and with position >123 and <345, where in 1-based system resource, all strings within region 1:124-344 will be revealed, while in 0-based system resource, all strings within region 1:123-344 will be revealed. You may want to check detail about 0-based v.s. 1-based above.

MolecularSequenceList.referenceseqidVariantCoordinate ● String scalar​

Search parameter by reference sequence and variant coordinate. This will refer to part of a locus or part of a gene where search region will be represented in 1-based system. Since the coordinateSystem can either be 0-based or 1-based, this search query will include the result of both coordinateSystem that contains the equivalent segment of the gene or whole genome sequence. For example, a search for sequence can be represented as referenceSeqId-variant-coordinate=NC_000001.11$lt345$gt123, this means it will search for the MolecularSequence resource with variants on NC_000001.11 and with position >123 and <345, where in 1-based system resource, all strings within region NC_000001.11:124-344 will be revealed, while in 0-based system resource, all strings within region NC_000001.11:123-344 will be revealed. You may want to check detail about 0-based v.s. 1-based above.

MolecularSequenceList.referenceseqidWindowCoordinate ● String scalar​

Search parameter by reference sequence and window. This will refer to part of a locus or part of a gene where search region will be represented in 1-based system. Since the coordinateSystem can either be 0-based or 1-based, this search query will include the result of both coordinateSystem that contains the equivalent segment of the gene or whole genome sequence. For example, a search for sequence can be represented as referenceSeqId-window-coordinate=NC_000001.11$lt345$gt123, this means it will search for the MolecularSequence resource with a window on NC_000001.11 and with position >123 and <345, where in 1-based system resource, all strings within region NC_000001.11:124-344 will be revealed, while in 0-based system resource, all strings within region NC_000001.11:123-344 will be revealed. You may want to check detail about 0-based v.s. 1-based above.

Type​

MolecularSequence object​

Raw data describing a biological sequence. If the element is present, it must have either a @value, an @id, or extensions