MolecularSequenceConnection
No description
MolecularSequenceConnection(
_cursor: String
_id: String
_lastUpdated: String
_tag: String
_profile: String
_security: String
_source: String
_text: String
_content: String
_list: String
_has: String
_query: String
_filter: String
_type: String
_sort: String
_count: String
_include: String
_revinclude: String
_summary: String
_total: String
_elements: String
_contained: String
_containedType: String
_customSearchParameters: String
chromosome: String
identifier: String
patient: String
referenceseqid: String
type: String
variantEnd: String
variantStart: String
windowEnd: String
windowStart: String
chromosomeVariantCoordinate: String
chromosomeWindowCoordinate: String
referenceseqidVariantCoordinate: String
referenceseqidWindowCoordinate: String
): ConnectionResult
Arguments
MolecularSequenceConnection._cursor ● String scalar
MolecularSequenceConnection._id ● String scalar
Is used to allow searching based on the logical identifier of resources
MolecularSequenceConnection._lastUpdated ● String scalar
Is used to match resources based on when the most recent change has been made
MolecularSequenceConnection._tag ● String scalar
Is used to match resources based on tag information in the Resource.meta.tag element
MolecularSequenceConnection._profile ● String scalar
Is used to match resources based on values in the Resource.meta.profile element
MolecularSequenceConnection._security ● String scalar
Is used to match resources based on security labels in the Resource.meta.security element
MolecularSequenceConnection._source ● String scalar
Is used to match resources based on source information in the Resource.meta.source element
MolecularSequenceConnection._text ● String scalar
Is used to perform searches against the narrative content of a resource
MolecularSequenceConnection._content ● String scalar
Is used to allow searching all textual content of a resource
MolecularSequenceConnection._list ● String scalar
Is used to test resources against references in a List resource
MolecularSequenceConnection._has ● String scalar
Provides limited support for reverse chaining - that is, selecting resources based on the properties of resources that refer to them
MolecularSequenceConnection._query ● String scalar
Is used to execute a pre-defined and named query operation
MolecularSequenceConnection._filter ● String scalar
Provides a syntax for expressing a set of query expressions on the underlying resources.
MolecularSequenceConnection._type ● String scalar
Is used to allow filtering of types in searches that are performed across multiple resource types (e.g., searches across the server root)
MolecularSequenceConnection._sort ● String scalar
Order to sort results in (can repeat for inner sort orders)
MolecularSequenceConnection._count ● String scalar
Number of results per page
MolecularSequenceConnection._include ● String scalar
Other resources to include in the search results that search matches point to
MolecularSequenceConnection._revinclude ● String scalar
Other resources to include in the search results when they refer to search matches
MolecularSequenceConnection._summary ● String scalar
Just return the summary elements (for resources where this is defined)
MolecularSequenceConnection._total ● String scalar
Request a precision of the total number of results for a request
MolecularSequenceConnection._elements ● String scalar
Request that only a specific set of elements be returned for resources
MolecularSequenceConnection._contained ● String scalar
Whether to return resources contained in other resources in the search matches
MolecularSequenceConnection._containedType ● String scalar
If returning contained resources, whether to return the contained or container resources
MolecularSequenceConnection._customSearchParameters ● String scalar
One or more custom search parameters defined via SearchParameter
MolecularSequenceConnection.chromosome ● String scalar
Chromosome number of the reference sequence
MolecularSequenceConnection.identifier ● String scalar
The unique identity for a particular sequence
MolecularSequenceConnection.patient ● String scalar
The subject that the observation is about
MolecularSequenceConnection.referenceseqid ● String scalar
Reference Sequence of the sequence
MolecularSequenceConnection.type ● String scalar
Amino Acid Sequence/ DNA Sequence / RNA Sequence
MolecularSequenceConnection.variantEnd ● String scalar
End position (0-based exclusive, which menas the acid at this position will not be included, 1-based inclusive, which means the acid at this position will be included) of the variant.
MolecularSequenceConnection.variantStart ● String scalar
Start position (0-based inclusive, 1-based inclusive, that means the nucleic acid or amino acid at this position will be included) of the variant.
MolecularSequenceConnection.windowEnd ● String scalar
End position (0-based exclusive, which menas the acid at this position will not be included, 1-based inclusive, which means the acid at this position will be included) of the reference sequence.
MolecularSequenceConnection.windowStart ● String scalar
Start position (0-based inclusive, 1-based inclusive, that means the nucleic acid or amino acid at this position will be included) of the reference sequence.
MolecularSequenceConnection.chromosomeVariantCoordinate ● String scalar
Search parameter by chromosome and variant coordinate. This will refer to part of a locus or part of a gene where search region will be represented in 1-based system. Since the coordinateSystem can either be 0-based or 1-based, this search query will include the result of both coordinateSystem that contains the equivalent segment of the gene or whole genome sequence. For example, a search for sequence can be represented as chromosome-variant-coordinate=1$lt345$gt123, this means it will search for the MolecularSequence resource with variants on chromosome 1 and with position >123 and <345, where in 1-based system resource, all strings within region 1:124-344 will be revealed, while in 0-based system resource, all strings within region 1:123-344 will be revealed. You may want to check detail about 0-based v.s. 1-based above.
MolecularSequenceConnection.chromosomeWindowCoordinate ● String scalar
Search parameter by chromosome and window. This will refer to part of a locus or part of a gene where search region will be represented in 1-based system. Since the coordinateSystem can either be 0-based or 1-based, this search query will include the result of both coordinateSystem that contains the equivalent segment of the gene or whole genome sequence. For example, a search for sequence can be represented as chromosome-window-coordinate=1$lt345$gt123, this means it will search for the MolecularSequence resource with a window on chromosome 1 and with position >123 and <345, where in 1-based system resource, all strings within region 1:124-344 will be revealed, while in 0-based system resource, all strings within region 1:123-344 will be revealed. You may want to check detail about 0-based v.s. 1-based above.
MolecularSequenceConnection.referenceseqidVariantCoordinate ● String scalar
Search parameter by reference sequence and variant coordinate. This will refer to part of a locus or part of a gene where search region will be represented in 1-based system. Since the coordinateSystem can either be 0-based or 1-based, this search query will include the result of both coordinateSystem that contains the equivalent segment of the gene or whole genome sequence. For example, a search for sequence can be represented as referenceSeqId-variant-coordinate=NC_000001.11$lt345$gt123, this means it will search for the MolecularSequence resource with variants on NC_000001.11 and with position >123 and <345, where in 1-based system resource, all strings within region NC_000001.11:124-344 will be revealed, while in 0-based system resource, all strings within region NC_000001.11:123-344 will be revealed. You may want to check detail about 0-based v.s. 1-based above.
MolecularSequenceConnection.referenceseqidWindowCoordinate ● String scalar
Search parameter by reference sequence and window. This will refer to part of a locus or part of a gene where search region will be represented in 1-based system. Since the coordinateSystem can either be 0-based or 1-based, this search query will include the result of both coordinateSystem that contains the equivalent segment of the gene or whole genome sequence. For example, a search for sequence can be represented as referenceSeqId-window-coordinate=NC_000001.11$lt345$gt123, this means it will search for the MolecularSequence resource with a window on NC_000001.11 and with position >123 and <345, where in 1-based system resource, all strings within region NC_000001.11:124-344 will be revealed, while in 0-based system resource, all strings within region NC_000001.11:123-344 will be revealed. You may want to check detail about 0-based v.s. 1-based above.